山东汉、回族男性人群父系遗传结构研究

doi:10.16359/j.1000-3193/AAS.2021.0007

人类学学报 ›› 2022, Vol. 41 ›› Issue (01): 65-72.doi: 10.16359/j.1000-3193/AAS.2021.0007

山东汉、回族男性人群父系遗传结构研究

张金科¹(), 董薇¹^,², 唐光峰¹, 黄晓亮¹, 杨振³, 王晓军¹, 张杰¹, 赵英健¹, 朱奕卿¹, 江丽²()

1.泰安市公安局刑事科学技术研究所,泰安 271000
2.公安部物证鉴定中心,法医遗传学公安部重点实验室,北京市现场物证检验工程技术研究中心,现场物证溯源技术国家工程实验室,北京 100038
3.泰安市公安局岱岳分局刑事侦查大队,泰安 271000

收稿日期:2020-06-05 出版日期:2022-02-15 发布日期:2021-04-09
通讯作者: 江丽
作者简介:张金科,学士,研究法医物证学方向。E-mail： 971064490@qq.com
基金资助:
国家自然基金课题(81772027);国家重点研发计划(2017YFC0803501);公安部物证鉴定中心基本科研业务费专项资金项目(2017JB025);公安部物证鉴定中心现场物证溯源技术国家工程实验室开放课题(2018NELKFKT15);生物样本由国家科技资源共享服务平台计划项目提供(YCZYPT[2017]01-3)

Paternal genetic structure of Han and Hui male populations in Shandong

ZHANG Jinke¹(), DONG Wei¹^,², TANG Guangfeng¹, HUANG Xiaoliang¹, YANG Zhen³, WANG Xiaojun¹, ZHANG Jie¹, ZHAO Yingjian¹, ZHU Yiqing¹, JIANG Li²()

1. Institute of Criminal Science and Technology, Tai’an Public Security Bureau, Tai’an 271000, China
2. Institute of Forensic Science, Ministry of Public Security (MPS) & MPS’ Key Laboratory of Forensic Genetics & Beijing Engineering Research Center of Crime Scene Evidence Examination & National Engineering Laboratory for Forensic Science, Beijing 100038, China
3. Criminal Investigation Brigade of Daiyue District, Tai’an Public Security Bureau, Tai’an 271000, China

Received:2020-06-05 Online:2022-02-15 Published:2021-04-09
Contact: JIANG Li

1. 75个SNP位点的频率.xlsx(56KB)

摘要/Abstract

摘要：

本研究基于75个Y-SNP位点和23个Y-STR基因座对山东汉、回族男性人群进行研究,旨在揭示两个人群的父系遗传结构,为法医学应用及群体遗传学等提供基础数据。研究基于微测序技术检测187份山东汉族和130份山东回族样本,获取75个Y-SNP位点分型;采用PowerPlex^®Y23试剂盒检测23个Y-STR基因座;采用直接计数法统计等位基因频率、单倍型频率及单倍群频率,根据公式D=n(1-∑pi²)/(n-1)计算基因多样性、单倍型多样性以及单倍群多样性;根据Median-joining方法,使用NETWORK 5.0和NETWORK Publisher构建并展示网络图。研究结果显示,单倍群O-M175、C-M130、N-M231、Q-M242为山东汉族男性人群主要的Y单倍群,单倍群O-M175、J-M304、R-M207、C-M130、N-M231为山东回族男性人群最主要的单倍群;23个Y-STR基因座在山东汉族男性样本中检出187种单倍型,单倍型多样性为1.0000,在山东回族中检出121种单倍型,单倍型多样性为0.9988;网络图显示同一Y单倍群的样本相对独立地聚集在一起,山东汉族与回族人群之间存在共享单倍群,同时也存在一些特异性单倍群,如单倍群J-M304、R-M207均以山东回族为主,单倍群Q-M242则以山东汉族为主。山东汉族和回族男性人群的主要单倍群均为单倍群O-M175;单倍群J-M304、R-M207在山东回族中的高频分布,单倍群Q-M242则在山东汉族中高频分布。研究表明山东回族人群中保留有一定比例的欧亚西部和中东特有的Y染色体类型。

关键词: 法医遗传, Y单倍群, Y-SNP, Y-STR, 山东人群

Abstract:

This study is based on 75 Y-SNPs and 23 Y-STRs to analyze the paternal genetic structure of Shandong Han and Hui males and provides basic data for forensic application and population genetics. Mini-sequencing was used to type 75 Y-SNPs of 187 individuals of Han and 130 individuals of Hui. The PowerPlex^®Y23 kit was used to type 23 Y-STRs of all individuals. Allele frequency, haplotype frequency and haplogroup frequency were calculated by direct counting. Gene diversity, haplotype diversity and haplogroup diversity were calculated according to the formula D=n(1-∑pi²)/(n-1). The median-joining networks were constructed using NETWORK 5.0 and NETWORK Publisher. The research results showed that haplogroup O-M175, C-M130, N-M231, Q-M242 were the major haplogroups of the Han population, and haplogroup O-M175, J-M304, R-M207, C-M130, N-M231 were the major haplogroups of Hui population. 187 haplotypes were detected in Han populations based on twenty-three Y-STR loci, and the haplotype diversity was 1.000. And 121 haplotypes were detected in Hui populations, the haplotype diversity was 0.9988. The Networks showed that the individuals of same haplogroup were relatively independently clustered. There were shared haplogroups between Han and Hui populations, as well as some population specific haplogroups. For example, haplogroups J-M304 and R-M207 were prevalent in Hui population, while haplogroup Q-M242 was prevalent in Han population. The major haplogroup of both populations was haplogroup O-M175. Haplogroups J-M304 and R-M207 were distributed at high frequencies in Shandong Hui male population, and haplogroups Q-M242 were distributed at high frequencies in the Shandong Han male population. A certain percentage of unique Y chromosome haplotypes in western Eurasia and the Middle East were retained among the Shandong Hui male population.

Key words: Forensic genetics, Y haplogroups, Y-SNPs, Y-STRs, Shandong populations

中图分类号:

Q986

张金科, 董薇, 唐光峰, 黄晓亮, 杨振, 王晓军, 张杰, 赵英健, 朱奕卿, 江丽. 山东汉、回族男性人群父系遗传结构研究[J]. 人类学学报, 2022, 41(01): 65-72.

ZHANG Jinke, DONG Wei, TANG Guangfeng, HUANG Xiaoliang, YANG Zhen, WANG Xiaojun, ZHANG Jie, ZHAO Yingjian, ZHU Yiqing, JIANG Li. Paternal genetic structure of Han and Hui male populations in Shandong[J]. Acta Anthropologica Sinica, 2022, 41(01): 65-72.

图/表 3

参考文献 29

[1]	中华人民共和国2010年人口普查数据[DB/OL].URL: http://www.stats.gov.cn/tjsj/pcsj/rkpc/6rp/indexch.htm, 2010
[2]	陈连开. 中国民族史纲要[M]. 北京: 中国财政经济出版社, 1999
[3]	程有为, 吴少珉. 论魏晋南北朝时期中原地区的民族问题[J]. 许昌学院学报, 1996(1): 15-20
[4]	周郢. 泰安回族士人与泰山文化[J]. 中国穆斯林, 2014(2): 60-63
[5]	金坡. 泰安芝田村清真寺考略[J]. 泰山学院学报, 2010, 32(4): 22-27
[6]	山东省志,第78卷,少数民族志[M]. 济南: 山东人民出版社, 1998
[7]	Jobling MA. The human Y chromosome: an evolutionary marker comes of age[J]. Nature Reviews Genetics, 2003, 4(8): 598-612 pmid: 12897772
[8]	Butler JM. Recent Developments in Y-Short Tandem Repeat and Y-Single Nucleotide Polymorphism Analysis[J]. Forensic Science Review, 2002, 15(2): 91-111
[9]	Jobling MA, Tyler-Smith C. Fathers and sons: the Y chromosome and human evolution[J]. Trends in Genetics, 1995, 11(11): 449-456 pmid: 8578602
[10]	Underhill PA, Shen P, Lin AA, et al. Y chromosome sequence variation and the history of human populations[J]. Nature Genetics, 2000, 26(3): 358-361 pmid: 11062480
[11]	侯一平. 法医物证学(第4版)[M]. 北京: 人民卫生出版社, 2016
[12]	文波. Y染色体、mtDNA多态性与东亚人群的遗传结构[D]. 上海:复旦大学, 2004
[13]	Nei M, Tajima F. DNA Polymorphism Detectable by Restriction Endonucleases[J]. Genetics, 1981, 97(1): 145-163 doi: 10.1093/genetics/97.1.145 pmid: 6266912
[14]	Bandelt HJ, Forster P, Rohl A. Median-joining networks for inferring intraspecific phylogenies[J]. Molecular Biology and Evolution, 1999, 16(1): 37-48 pmid: 10331250
[15]	Olofsson JK, Mogensen HS, Buchard A, et al. Forensic and population genetic analyses of Danes, Greenlanders and Somalis typed with the Yfiler Plus PCR amplification kit[J]. Forensic Science International Genetics, 2015, 16: 232-236 doi: 10.1016/j.fsigen.2015.02.006 URL
[16]	Ullah I, Olofsson JK, Margaryan A, et al. High Y-chromosomal Differentiation Among Ethnic Groups of Dir and Swat Districts, Pakistan[J]. Annals of Human Genetics, 2017, 81(6): 234-248 doi: 10.1111/ahg.12204 pmid: 28771684
[17]	Ferri G, Robino C, Alù M, et al. Molecular characterisation and population genetics of the DYS458.2 allelic variant[J]. Forensic Science International: Genetics Supplement Series, 2008, 1(1): 203-205 doi: 10.1016/j.fsigss.2007.10.217 URL
[18]	Xie MK, Song F, Li JN, et al. Genetic substructure and forensic characteristics of Chinese Hui populations using 157 Y-SNPs and 27 Y-STRs[J]. Forensic Science International: Genetics, 2019, 41: 11-18 doi: 10.1016/j.fsigen.2019.03.022 URL
[19]	Zhong H, Shi H, Qi XB, et al. Extended Y chromosome investigation suggests postglacial migrations of modern humans into East Asia via the northern route[J]. Molecular Biology and Evolution, 2011, 28(1): 717-727 doi: 10.1093/molbev/msq247 pmid: 20837606
[20]	Zhang XM, Kampuansai J, Qi XB, et al. An updated phylogeny of the human Y-chromosome lineage O2aM95 with novel SNPs[J]. PLoS One, 2014, 9(6): e101020 doi: 10.1371/journal.pone.0101020 URL
[21]	Malhi RS, Gonzalez-Oliver A, Schroeder KB, et al. Distribution of Y chromosomes among native North Americans: a study of Athapaskan population history[J]. American Journal of Physical Anthropology, 2010, 137(4): 412-424 doi: 10.1002/ajpa.v137:4 URL
[22]	Dulik MC, Owings AC, Gaieski JB, et al. Y-chromosome analysis reveals genetic divergence and new founding native lineages in Athapaskan- and Eskimoan-speaking populations[J]. Proc Natl Acad Sci USA, 2012, 109(22): 8471-8476 doi: 10.1073/pnas.1118760109 URL
[23]	Sun N, Ma PC, Yan S, et al. Phylogeography of Y-chromosome haplogroup Q1a1a-M120, a paternal lineage connecting populations in Siberia and East Asia[J]. Annals of Human Biology, 2019: 1-18
[24]	Hong WG, Chen SW, Shao HW, et al. HLA class I polymorphism in Mongolian and Hui ethnic groups from Northern China, Hum[J]. Immunol. 2007, 68(5): 439-448
[25]	Gladney DC. Ethnic identity in China: the making of a Muslim minority nationality[M]. Fort Worth: Harcourt Brace College Publishers, 1998, 159-176
[26]	王传超. 东亚人群遗传历史[D]. 上海:复旦大学. 2015
[27]	Tu J, Yip VF, Du R. Ethnic Groups in China[M]. New York: Science Press, 1993
[28]	王钟翰. 中国民族史[M]. 北京: 中国社会科学出版社, 1994
[29]	董薇, 张金科, 黄晓亮, 等. 基于27重SNP族群推断体系研究泰安汉、回族遗传结构[J]. 刑事技术, 2020, 45(4): 348-353

基因座Locus	权重Weight	突变率Mutation rate¹⁾	基因多样性/Genetic diversity
基因座Locus	权重Weight	突变率Mutation rate¹⁾	山东汉族Han in Shandong	山东回族Hui in Shandong
DYS570	1	0.0114	0.8319	0.8055
DYS576	1	0.0126	0.7877	0.7605
DYS458	2	0.0062	0.8138	0.8130
DYS439	3	0.0055	0.6856	0.6818
DYS389 II	4	0.0043	0.7644	0.7676
DYS456	4	0.0044	0.6296	0.6618
DYS481	4	0.0049	0.8139	0.7608
DYS635	4	0.0042	0.7632	0.7747
DYS533	5	0.0037	0.5720	0.6830
DYS549	5	0.0033	0.6163	0.6011
DYS19	6	0.0022	0.7042	0.7299
DYS389 I	6	0.0027	0.6126	0.6546
YGATAH4	6	0.0030	0.6089	0.6600
DYS390	7	0.0021	0.6818	0.7106
DYS391	7	0.0025	0.3868	0.3690
DYS448	7	0.0014	0.7043	0.7392
DYS643	7	0.0012	0.6841	0.7077
DYS392	8	0.0005	0.7223	0.7141
DYS393	8	0.0011	0.5873	0.6933
DYS437	8	0.0013	0.5410	0.3844
DYS438	9	0.0004	0.4651	0.5876

基因座Locus	权重Weight	突变率Mutation rate¹⁾	基因多样性/Genetic diversity
基因座Locus	权重Weight	突变率Mutation rate¹⁾	山东汉族Han in Shandong	山东回族Hui in Shandong
DYS570	1	0.0114	0.8319	0.8055
DYS576	1	0.0126	0.7877	0.7605
DYS458	2	0.0062	0.8138	0.8130
DYS439	3	0.0055	0.6856	0.6818
DYS389 II	4	0.0043	0.7644	0.7676
DYS456	4	0.0044	0.6296	0.6618
DYS481	4	0.0049	0.8139	0.7608
DYS635	4	0.0042	0.7632	0.7747
DYS533	5	0.0037	0.5720	0.6830
DYS549	5	0.0033	0.6163	0.6011
DYS19	6	0.0022	0.7042	0.7299
DYS389 I	6	0.0027	0.6126	0.6546
YGATAH4	6	0.0030	0.6089	0.6600
DYS390	7	0.0021	0.6818	0.7106
DYS391	7	0.0025	0.3868	0.3690
DYS448	7	0.0014	0.7043	0.7392
DYS643	7	0.0012	0.6841	0.7077
DYS392	8	0.0005	0.7223	0.7141
DYS393	8	0.0011	0.5873	0.6933
DYS437	8	0.0013	0.5410	0.3844
DYS438	9	0.0004	0.4651	0.5876

山东汉、回族男性人群父系遗传结构研究

Paternal genetic structure of Han and Hui male populations in Shandong

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